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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115940757_115941188_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115940757 - 115941188
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TGATTATTACGC
Flanking Amino Acid:
AQNYMGRKSKVGAPPLEKFN
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
83
0.74
0.8
77.3
31.5
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
45
-0.4
2.1
56.59
41.7

Associated Gene:

Gene:
HADHB
Ensembl Gene ID:
ENSAPLG00000003436
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003536
115939833 - 115953105
13273