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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115942633_115943035_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115942633 - 115943035
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTGGC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGGTTCTTAACT
Flanking Amino Acid:
SQDPKDQLLLGPTYATPKVL
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
64.7
41
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
31.2
-2.1
3.4
34.3
42
Minor BPS
81.5
1.07
1.1
88.34
36.7

Associated Gene:

Gene:
HADHB
Ensembl Gene ID:
ENSAPLG00000003436
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003536
115939833 - 115953105
13273