About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115944974_115945914_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
115944974 - 115945914
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
TAAACATCAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAC
Flanking Amino Acid:
LLDVVPFKVPGRDTVTKDNG
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.3
0.21
1
52.2
41.2
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
70.6
0.62
1.3
75.99
33.7

Associated Gene:

Gene:
HADHB
Ensembl Gene ID:
ENSAPLG00000003436
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003536
115939833 - 115953105
13273