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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115947572_115948118_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115947572 - 115948118
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTCTCCTCACGG
Flanking Amino Acid:
CISSNQAMTTGVGLIAAGQC
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
88.6
0.87
0.6
84.3
23.6
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
47.8
-0.3
2.2
59.08
48.4

Associated Gene:

Gene:
HADHB
Ensembl Gene ID:
ENSAPLG00000003436
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003536
115939833 - 115953105
13273