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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115951200_115952306_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115951200 - 115952306
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TTCTTGTTAACA
Flanking Amino Acid:
LSCSPQLQAAAVQPKSKKTL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
79.7
0.67
0.8
77.4
31.4
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
65.5
0.48
2.1
78.35
38.8

Associated Gene:

Gene:
HADHB
Ensembl Gene ID:
ENSAPLG00000003436
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003536
115939833 - 115953105
13273