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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115961337_115962116_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115961337 - 115962116
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCTT
5'SS Class:
major
3'SS Sequence:
TTGCTGCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GGCTCCCTATTT
Flanking Amino Acid:
VVRFNTPNSKVNTLSKQLSA
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
66.4
44.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
75.6
0.58
0.9
66.2
40.8
Minor 5ss
35.7
-1.6
3.7
56.5
47.7
Minor BPS
48.8
-0
1.9
66.23
44.3

Associated Gene:

Gene:
HADHA
Ensembl Gene ID:
ENSAPLG00000003803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019598
115961094 - 115980738
19645
ENSAPLT00000003977
115961094 - 116002788
41695
ENSAPLT00000037246
115961094 - 115980738
19645
ENSAPLT00000022260
115961094 - 115980738
19645