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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115964899_115967367_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115964899 - 115967367
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGACGT
5'SS Class:
major
3'SS Sequence:
CTTCTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GTTTCCTCAAGA
Flanking Amino Acid:
GLVDQLVDPLGPGVKTPEAR
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
67.6
43.5
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
80.7
0.69
0.8
75.1
33.3
Minor 5ss
30
-2.3
3
40.5
45
Minor BPS
64.7
0.46
1.9
76.68
40.2

Associated Gene:

Gene:
HADHA
Ensembl Gene ID:
ENSAPLG00000003803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022260
115961094 - 115980738
19645
ENSAPLT00000019598
115961094 - 115980738
19645
ENSAPLT00000003977
115961094 - 116002788
41695
ENSAPLT00000037246
115961094 - 115980738
19645