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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115967885_115968736_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115967885 - 115968736
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
GTTCTTTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTGACT
Flanking Amino Acid:
LYPAPLKIIEVVKAGLDQGR
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
67.8
0.4
1
62.9
43
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
82.6
1.11
1
91.97
30.4

Associated Gene:

Gene:
HADHA
Ensembl Gene ID:
ENSAPLG00000003803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003977
115961094 - 116002788
41695
ENSAPLT00000037246
115961094 - 115980738
19645
ENSAPLT00000022260
115961094 - 115980738
19645
ENSAPLT00000019598
115961094 - 115980738
19645