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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115972602_115972891_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115972602 - 115972891
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCCCCCCTCACC
Flanking Amino Acid:
NKFGTPQREVKTLAVLGAGL
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
78.2
36.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.2
0.64
0.9
73.2
36.5
Minor 5ss
37.8
-1.4
2.7
44.3
36.8
Minor BPS
47.9
-0.1
2.1
60.5
44.7

Associated Gene:

Gene:
HADHA
Ensembl Gene ID:
ENSAPLG00000003803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022260
115961094 - 115980738
19645
ENSAPLT00000019598
115961094 - 115980738
19645
ENSAPLT00000003977
115961094 - 116002788
41695
ENSAPLT00000037246
115961094 - 115980738
19645