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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115976506_115977309_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115976506 - 115977309
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTATTCTCACCT
Flanking Amino Acid:
KQGKVVIVVKDGPGFYTTRC
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.9
0.61
0.7
70
30.9
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
60.2
0.4
1.8
80.74
41

Associated Gene:

Gene:
HADHA
Ensembl Gene ID:
ENSAPLG00000003803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022260
115961094 - 115980738
19645
ENSAPLT00000019598
115961094 - 115980738
19645
ENSAPLT00000003977
115961094 - 116002788
41695
ENSAPLT00000037246
115961094 - 115980738
19645