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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115978044_115978399_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115978044 - 115978399
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
FKLMVEKGFLGRKAGKGFYV
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
77
0.61
0.9
73.5
31.4
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
HADHA
Ensembl Gene ID:
ENSAPLG00000003803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003977
115961094 - 116002788
41695
ENSAPLT00000037246
115961094 - 115980738
19645
ENSAPLT00000022260
115961094 - 115980738
19645
ENSAPLT00000019598
115961094 - 115980738
19645