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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11597844_11598184_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11597844 - 11598184
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCCCTTAAG
Flanking Amino Acid:
ELRARLGATEVDYVAGKVFF
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.3
0.59
1
80.2
25.8
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
52.9
-0
2.2
70.01
42.5

Associated Gene:

Gene:
THUMPD2
Ensembl Gene ID:
ENSAPLG00000008775
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009129
11597751 - 11606212
8462