Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115979103_115980206_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115979103 - 115980206

Intron Length:

1104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTGTCCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAC

U12 Branch Point Sequence:

TTCTTTACCACC

Flanking Amino Acid:

FGLGFPPCLGGPFRYADSYG

Intron Amino Acid Position:

708

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.7

81.3

32.8

Major BPS

0.6

65.6

41.1

Major PPT

76.7

0.6

0.8

30.9

Minor 5ss

30.9

-2.2

3.2

39.6

46.4

Minor BPS

43.2

-0.5

2.1

58.43

Associated Gene:

Gene:

HADHA

Ensembl Gene ID:

ENSAPLG00000003803

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022260

115961094 - 115980738

19645

ENSAPLT00000019598

115961094 - 115980738

19645

ENSAPLT00000003977

115961094 - 116002788

41695

ENSAPLT00000037246

115961094 - 115980738

19645