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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115985484_115986451_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115985484 - 115986451
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCGTG
5'SS Class:
major
3'SS Sequence:
TGTCCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
AGCCCCTCAGCT
Flanking Amino Acid:
MEAITFSVKVVSGEFSEDS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.3
59.2
45.8
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
73
0.52
0.9
66.6
34.5
Minor 5ss
34.9
-1.7
3.5
46.7
48.8
Minor BPS
49
0.01
1.8
65.49
44.4

Associated Gene:

Gene:
GAREM2
Ensembl Gene ID:
ENSAPLG00000025887
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019051
115985457 - 115989335
3879