About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115988134_115988255_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115988134 - 115988255
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CCTTCCTCCATC
Flanking Amino Acid:
LSYYSSGLHDGSVPRSGSGS
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
75.7
0.58
0.8
74.6
29
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
49.8
-0
2
61.86
44.3

Associated Gene:

Gene:
GAREM2
Ensembl Gene ID:
ENSAPLG00000025887
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019051
115985457 - 115989335
3879