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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115995310_115997908_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115995310 - 115997908
Intron Length:
2599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ACTTCTCTAACC
Flanking Amino Acid:
LTLAEDILRKTPVKEPNSEN
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.8
0.74
0.9
77.1
37.1
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
65.1
0.45
1.7
73.29
37.7

Associated Gene:

Gene:
RAB10
Ensembl Gene ID:
ENSAPLG00000018031
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025124
115994873 - 116029643
34771