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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115998011_115998503_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115998011 - 115998503
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ATAACTCTAACC
Flanking Amino Acid:
RVVPKAKGEQIAREHGIRFF
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
80.8
0.69
0.9
81.2
36.5
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
56.9
0.2
1.7
67.52
37.4

Associated Gene:

Gene:
RAB10
Ensembl Gene ID:
ENSAPLG00000018031
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025124
115994873 - 116029643
34771