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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115998594_116000953_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115998594 - 116000953
Intron Length:
2360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TATCTCGTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TGTCTGTTATCT
Flanking Amino Acid:
ISKWLRNIDEHANEDVERML
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
75.3
0.57
0.9
69.9
36.2
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
48.8
-0
2.3
73.71
43

Associated Gene:

Gene:
RAB10
Ensembl Gene ID:
ENSAPLG00000018031
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025124
115994873 - 116029643
34771