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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11599900_11601100_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11599900 - 11601100
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
GAIAKILTSQEIGRAIGIAL
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
THUMPD2
Ensembl Gene ID:
ENSAPLG00000008775
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009129
11597751 - 11606212
8462