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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116001093_116009867_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116001093 - 116009867
Intron Length:
8775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTGGCTCTGACA
Flanking Amino Acid:
LQGKKIKLQIWDTAGQERFH
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
82.4
0.73
0.8
76.3
32.2
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
52.1
0.06
1.8
66.57
40.3

Associated Gene:

Gene:
RAB10
Ensembl Gene ID:
ENSAPLG00000018031
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025124
115994873 - 116029643
34771