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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116009929_116029494_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116009929 - 116029494
Intron Length:
19566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTCAGTGCC
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAAATACTAATT
Flanking Amino Acid:
AFNTTFISTIGIDFKIKTVE
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
67.6
39.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.9
0.78
0.8
84.5
30.4
Minor 5ss
29.9
-2.3
3
37.8
39.6
Minor BPS
46.5
-0.1
1.9
64.85
39

Associated Gene:

Gene:
RAB10
Ensembl Gene ID:
ENSAPLG00000018031
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025124
115994873 - 116029643
34771