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Intron Name: Anas_platyrhynchos_platyrhynchos_3_11601720_11602021_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11601720 - 11602021

Intron Length:

302

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCATT

5'SS Class:

strong_major

3'SS Sequence:

TTGCTGTCTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTACAT

U12 Branch Point Sequence:

ATTATCTTACAT

Flanking Amino Acid:

IHSAVGIPLFSLPLANREYI

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

81.8

38.5

Major BPS

70.4

0.51

1.1

78.7

33.6

Major PPT

78.9

0.65

0.9

72.5

37.8

Minor 5ss

43.9

-0.7

3.2

65.5

45.8

Minor BPS

56.9

0.29

1.7

76.12

40.2

Associated Gene:

Gene:

THUMPD2

Ensembl Gene ID:

ENSAPLG00000008775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009129

11597751 - 11606212

8462