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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11603156_11604236_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11603156 - 11604236
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATGTCAAGACCT
Flanking Amino Acid:
KIELLKASVKALPLPAESFD
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
81.5
0.71
0.8
76.6
32
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
43.4
-0.4
2.1
65.79
44.1

Associated Gene:

Gene:
THUMPD2
Ensembl Gene ID:
ENSAPLG00000008775
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009129
11597751 - 11606212
8462