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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116119376_116125817_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116119376 - 116125817
Intron Length:
6442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCATACGTATTT
Flanking Amino Acid:
PASELQPGSRVSSRLSQTSS
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
44.9
-0.3
2.3
65.34
45.4

Associated Gene:

Gene:
ASXL2
Ensembl Gene ID:
ENSAPLG00000005877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006097
116119204 - 116152293
33090