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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116125934_116131670_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116125934 - 116131670
Intron Length:
5737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTGCTCACGT
Flanking Amino Acid:
QKHSKKALKQALKQQQQKQQ
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.6
0.67
0.7
72.4
32.3
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
45.1
-0.2
2.4
70.25
46.6

Associated Gene:

Gene:
ASXL2
Ensembl Gene ID:
ENSAPLG00000005877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006093
116108921 - 116152293
43373
ENSAPLT00000036278
116098476 - 116153624
55149
ENSAPLT00000024245
116066128 - 116152293
86166
ENSAPLT00000019597
116056792 - 116153624
96833
ENSAPLT00000006097
116119204 - 116152293
33090
ENSAPLT00000047015
116056792 - 116153624
96833