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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116131798_116140681_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116131798 - 116140681
Intron Length:
8884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
TCATTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTCTTTTTCATT
Flanking Amino Acid:
AASDSAPTKSGQLKRTKCAE
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
63.7
41.8
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.8
80.6
31.1
Minor 5ss
32.1
-2
3.4
40.7
40.7
Minor BPS
54.7
0.23
1.7
71.21
40.9

Associated Gene:

Gene:
ASXL2
Ensembl Gene ID:
ENSAPLG00000005877
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047015
116056792 - 116153624
96833