About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11625838_11632238_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11625838 - 11632238
Intron Length:
6401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
GTTCGCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AGCTAATGAATT
Flanking Amino Acid:
NIVAYFGSYLRRDKLWICME
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
76.7
0.6
0.9
73.6
37
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
46.6
-0.1
1.8
62.66
41

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021038
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041
ENSAPLT00000039392
11612943 - 11683618
70676
ENSAPLT00000021804
11612943 - 11690983
78041