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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116278909_116284783_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116278909 - 116284783
Intron Length:
5875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTGTT
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGGGTGCTGACG
Flanking Amino Acid:
TFVNRLQSGARALDSPGRLD
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
76.5
39.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
78.8
0.65
0.7
73.4
24.8
Minor 5ss
34.5
-1.8
3.3
50.9
45.4
Minor BPS
38.5
-1
2.3
42.94
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004980
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005212
116261505 - 116368067
106563