Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116307278_116314377_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

116307278 - 116314377

Intron Length:

7100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCCAT

5'SS Class:

major

3'SS Sequence:

CCAACGATTATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

TCTCTCTTCACC

Flanking Amino Acid:

QLEGLMKLLKEEEQKQAAQA

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

71.6

40.1

Major BPS

77.5

0.68

79.6

Major PPT

58.6

0.19

50.1

37.8

Minor 5ss

41.2

-1

3.2

56.8

41.8

Minor BPS

61.1

0.33

1.8

71.01

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044772

116284602 - 116368067

83466

ENSAPLT00000005212

116261505 - 116368067

106563