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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11632304_11634397_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11632304 - 11634397
Intron Length:
2094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCCAA
5'SS Class:
major
3'SS Sequence:
CTTTCCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTCTTTCCATT
Flanking Amino Acid:
GGGSLQDIYHVTGPLSEQQI
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
59.5
41
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.6
0.78
0.8
81.8
28.5
Minor 5ss
43.4
-0.7
2.9
52.4
46.7
Minor BPS
48.2
-0
1.9
72.72
39

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021804
11612943 - 11690983
78041
ENSAPLT00000021038
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041
ENSAPLT00000039392
11612943 - 11683618
70676