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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116395331_116395482_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116395331 - 116395482
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
GCTGCCCTAATC
Flanking Amino Acid:
MLSEGQDVSYREGINIEVEV
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
83.1
0.74
0.9
77.3
37
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
54.4
0.12
1.8
63.53
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022092
116390238 - 116395771
5534