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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116399934_116400233_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116399934 - 116400233
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCGTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTCTAGCACT
Flanking Amino Acid:
DFMVIACDGIWNVMSSQEVV
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.8
0.72
0.8
75.8
32.8
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
50.7
0.1
2.2
81.75
39.7

Associated Gene:

Gene:
PPM1G
Ensembl Gene ID:
ENSAPLG00000021278
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026484
116397654 - 116419134
21481