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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116407020_116418832_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116407020 - 116418832
Intron Length:
11813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CCCTCTTTAAAT
Flanking Amino Acid:
AMFSVYDGHGGEEVALYCAK
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.4
0.75
0.8
80.7
31.3
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
65.2
0.56
1.5
72.3
45

Associated Gene:

Gene:
PPM1G
Ensembl Gene ID:
ENSAPLG00000021278
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026484
116397654 - 116419134
21481