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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116443016_116443107_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116443016 - 116443107
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATATTG
Flanking Amino Acid:
WADVKENKARVIFITEYMSS
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76
0.59
0.9
69.4
36.6
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
49.6
-0.1
1.9
61.03
41.1

Associated Gene:

Gene:
NRBP1
Ensembl Gene ID:
ENSAPLG00000005366
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022039
116428373 - 116469555
41183
ENSAPLT00000005601
116428373 - 116468477
40105