Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116443198_116443710_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116443198 - 116443710

Intron Length:

513

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTGTTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGATTTTTATCC

Flanking Amino Acid:

KKNHKTMNEKAWKRWCTQIL

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

1.1

87.9

29.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.63

0.9

72.1

Minor 5ss

55.9

0.2

2.5

39.7

Minor BPS

59.7

0.28

1.6

67.32

38.3

Associated Gene:

Gene:

NRBP1

Ensembl Gene ID:

ENSAPLG00000005366

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022039

116428373 - 116469555

41183

ENSAPLT00000005601

116428373 - 116468477

40105