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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116443752_116445151_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116443752 - 116445151
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTGTTCTGAATC
Flanking Amino Acid:
RWCTQILSALSYLHSCDPPI
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
68.9
0.43
0.9
59.3
41.7
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
61.5
0.34
1.5
66.3
40

Associated Gene:

Gene:
NRBP1
Ensembl Gene ID:
ENSAPLG00000005366
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022039
116428373 - 116469555
41183
ENSAPLT00000005601
116428373 - 116468477
40105