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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116445247_116449890_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116445247 - 116449890
Intron Length:
4644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTACCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TGCTCTGTTACC
Flanking Amino Acid:
QHNGLIKIGSVFHRIFANVA
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
68.7
0.42
1
63.3
37.4
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
47.7
-0.2
2.3
62.85
43

Associated Gene:

Gene:
NRBP1
Ensembl Gene ID:
ENSAPLG00000005366
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022039
116428373 - 116469555
41183