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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116445247_116458421_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116445247 - 116458421
Intron Length:
13175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GACTTTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GTTTCCTGTATA
Flanking Amino Acid:
QHNGLIKIGSVAPDTINNHV
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
74.5
0.55
0.9
66.1
40.5
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
60
0.31
1.8
73.02
38.4

Associated Gene:

Gene:
NRBP1
Ensembl Gene ID:
ENSAPLG00000005366
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005601
116428373 - 116468477
40105