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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116460097_116460174_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116460097 - 116460174
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATATCATCATCT
Flanking Amino Acid:
IQLLEDPLQREFIQKCLEQD
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
49.4
0.03
2
73.41
42.7

Associated Gene:

Gene:
NRBP1
Ensembl Gene ID:
ENSAPLG00000005366
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022039
116428373 - 116469555
41183
ENSAPLT00000005601
116428373 - 116468477
40105