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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116460697_116467234_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116460697 - 116467234
Intron Length:
6538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACTTCAGTACTT
Flanking Amino Acid:
NHADREGVKMIFSQSPALEL
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.9
0.81
0.7
77.8
31.1
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
44.7
-0.3
2.4
66.91
44.3

Associated Gene:

Gene:
NRBP1
Ensembl Gene ID:
ENSAPLG00000005366
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022039
116428373 - 116469555
41183
ENSAPLT00000005601
116428373 - 116468477
40105