Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116467675_116468099_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116467675 - 116468099

Intron Length:

425

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTACGTTCC

5'SS Class:

major

3'SS Sequence:

CTCTACCATGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

ACTTCTCTACCA

Flanking Amino Acid:

ESVEEGVKHHLTLLLKLEDK

Intron Amino Acid Position:

434

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.1

36.8

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

72.5

0.51

0.9

66.1

34.5

Minor 5ss

42.8

-0.8

57.9

39.9

Minor BPS

50.9

0.03

1.9

65.95

40.8

Associated Gene:

Gene:

NRBP1

Ensembl Gene ID:

ENSAPLG00000005366

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022039

116428373 - 116469555

41183

ENSAPLT00000005601

116428373 - 116468477

40105