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Intron Name: Anas_platyrhynchos_platyrhynchos_3_116472740_116473923_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116472740 - 116473923

Intron Length:

1184

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

ATCTCTTTTATT

Flanking Amino Acid:

GVRSLPCVLTDISQPCMPRC

Intron Amino Acid Position:

2018

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

35.1

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

92.9

0.96

0.7

88.5

28.1

Minor 5ss

45.4

-0.5

2.5

59.2

45.4

Minor BPS

64.1

0.52

1.6

77.58

39.2

Associated Gene:

Gene:

IFT172

Ensembl Gene ID:

ENSAPLG00000004257

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043038

116471394 - 116512975

41582