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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116473097_116473923_R

Intron Information:

Intron Rank:
45
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
116473097 - 116473923
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTATGGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TGTTACTGTATG
Flanking Amino Acid:
GVRSLPCVLTGYPVLRNKIE
Intron Amino Acid Position:
1996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
58.2
0.19
1.2
50.8
46.7
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
47.2
-0.3
2
58.2
43

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493