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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116474078_116474473_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116474078 - 116474473
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTCTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAG
U12 Branch Point Sequence:
CATGCAGTATCA
Flanking Amino Acid:
VPLSAHQHVPEENREEARDW
Intron Amino Acid Position:
1945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
48.6
-0
1.7
59.7
46.7
Major PPT
79.2
0.66
0.8
73
31.9
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
40.6
-0.7
2.4
53.21
44.9

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426