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Intron Name: Anas_platyrhynchos_platyrhynchos_3_116476098_116477667_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116476098 - 116477667

Intron Length:

1570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGTTC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTGTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTTAT

U12 Branch Point Sequence:

TATGGCTTTACT

Flanking Amino Acid:

RSAAQGVKQLDTVAAKLSIS

Intron Amino Acid Position:

1860

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

75.7

34.8

Major BPS

0.47

1.2

61.1

45.5

Major PPT

82.1

0.72

0.8

76.4

32.3

Minor 5ss

41.4

-1

3.3

55.7

43.3

Minor BPS

53.6

0.2

2.2

76.91

45.3

Associated Gene:

Gene:

IFT172

Ensembl Gene ID:

ENSAPLG00000004257

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025481

116472550 - 116512975

40426

ENSAPLT00000004476

116472650 - 116512975

40326

ENSAPLT00000047977

116471483 - 116512975

41493

ENSAPLT00000043038

116471394 - 116512975

41582

ENSAPLT00000040658

116472550 - 116512975

40426