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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116478684_116479168_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116478684 - 116479168
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAGAT
U12 Branch Point Sequence:
TGTCCCTCAAGA
Flanking Amino Acid:
VHHGAPANPQNFNIYKRLFV
Intron Amino Acid Position:
1783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
54.8
0.12
1.2
51.3
42.7
Major PPT
88.5
0.86
0.8
84
31
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
57.1
0.22
1.9
70.34
41.4

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426