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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116479286_116480970_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116479286 - 116480970
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGACTCTCATGC
Flanking Amino Acid:
EKCLEVAAKQNYKVLHKYVA
Intron Amino Acid Position:
1744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75
0.56
0.9
65.7
40.9
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
42
-0.6
1.9
49.5
40.4

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582