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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11647962_11648923_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11647962 - 11648923
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCATA
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
TGCTGCTTAACT
Flanking Amino Acid:
REEKTRSEINFGQVKFDPPL
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
71.3
40.3
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
86.3
0.82
0.6
85.5
21.9
Minor 5ss
45.9
-0.4
2.9
67.6
43.1
Minor BPS
71.4
0.75
1.8
84.57
42.1

Associated Gene:

Gene:
MAP4K3
Ensembl Gene ID:
ENSAPLG00000008982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021038
11612943 - 11690983
78041
ENSAPLT00000009465
11612943 - 11690983
78041
ENSAPLT00000039392
11612943 - 11683618
70676
ENSAPLT00000021804
11612943 - 11690983
78041