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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116484130_116484849_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116484130 - 116484849
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
AACTGGTGAAAG
Flanking Amino Acid:
KPELAIKYYKEADMWSEALR
Intron Amino Acid Position:
1544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
79.7
0.67
0.9
73.5
37
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
37.8
-1
2.4
41.02
42.9

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040658
116472550 - 116512975
40426
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582