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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_116485031_116485155_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116485031 - 116485155
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TTGATTCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTCTCTTATTA
Flanking Amino Acid:
KAGKPKEAVLMFVHNQNWDA
Intron Amino Acid Position:
1483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
70.9
39.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
66.2
0.37
1
59.3
41.9
Minor 5ss
44.6
-0.6
2.5
58.5
39.4
Minor BPS
59.7
0.3
1.6
69.16
37.3

Associated Gene:

Gene:
IFT172
Ensembl Gene ID:
ENSAPLG00000004257
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025481
116472550 - 116512975
40426
ENSAPLT00000004476
116472650 - 116512975
40326
ENSAPLT00000047977
116471483 - 116512975
41493
ENSAPLT00000043038
116471394 - 116512975
41582
ENSAPLT00000040658
116472550 - 116512975
40426